# Tutorials

## Tutorials

- [Tutorials](https://jodyphelan.gitbook.io/tutorials/master.md)
- [Pryor](https://jodyphelan.gitbook.io/tutorials/linux/pryor.md): Accessing the LSHTM servers using pryor
- [SSH](https://jodyphelan.gitbook.io/tutorials/linux/ssh.md): Signing in to the server
- [Putty](https://jodyphelan.gitbook.io/tutorials/linux/putty.md)
- [Transferring files](https://jodyphelan.gitbook.io/tutorials/linux/transferring-files.md): Transferring files to and from a server
- [Screen](https://jodyphelan.gitbook.io/tutorials/linux/screen.md): Quick tutorial on how to use screen
- [Parallel](https://jodyphelan.gitbook.io/tutorials/linux/parallel.md): Using parallel to automate jobs
- [Sample QC](https://jodyphelan.gitbook.io/tutorials/ngs/sample-qc.md)
- [Consensus building](https://jodyphelan.gitbook.io/tutorials/ngs/consensus-building.md): This page describes a basic procedure to generate consensus sequences
- [FastQ to VCF](https://jodyphelan.gitbook.io/tutorials/ngs/fastq-to-vcf.md): This page describes the pipeline to go all the way from fastq data to a merged multi-sample VCF
- [Mapping pipeline](https://jodyphelan.gitbook.io/tutorials/ngs/mapping-pipeline.md)
- [Fst with delly](https://jodyphelan.gitbook.io/tutorials/ngs/fst-with-delly.md)
- [Kraken2](https://jodyphelan.gitbook.io/tutorials/ngs/kraken2.md)
- [TryCatch](https://jodyphelan.gitbook.io/tutorials/r/trycatch.md)
- [Nvidia drivers](https://jodyphelan.gitbook.io/tutorials/sysadmin/nvidia-drivers.md)
- [Beagle-GPU](https://jodyphelan.gitbook.io/tutorials/sysadmin/beagle-gpu.md)